High-quality reference genomes of swallowtail butterflies provide insights into their coloration evolution

	High-quality reference genomes of swallowtail butterflies provide insights into their coloration evolution
	He, JW; Zhang, R; Yang, J; Chang, Z; Zhu, LX; Lu, SH; Xie, FA; Mao, JL; Dong, ZW; Liu, GC; Hu, P; Dong, Y; Wan, WT; Zhao, RP; Xiong, TZ; Leon-Cortes, JL; Mao, CY; Zhang, W; Zhan, S; Li, J; Chen, L; Wang, W; Li, XY
	2022
发表期刊	ZOOLOGICAL RESEARCH
ISSN	2095-8137
卷号	43 期号:3 页码:367-379
摘要	Swallowtail butterflies (Papilionidae) are a historically significant butterfly group due to their colorful wing patterns, extensive morphological diversity, and phylogenetically important position as a sister group to all other butterflies and have been widely studied regarding ecological adaption, phylogeny, genetics, and evolution. Notably, they contain a unique class of pigments, i.e., papiliochromes, which contribute to their color diversity and various biological functions such as predator avoidance and mate preference. To date, however, the genomic and genetic basis of their color diversity and papiliochrome origin in a phylogenetic and evolutionary context remain largely unknown. Here, we obtained high-quality reference genomes of 11 swallowtail butterfly species covering all tribes of Papilioninae and Parnassiinae using long-read sequencing technology. Combined with previously published butterfly genomes, we obtained robust phylogenetic relationships among tribes, overcoming the challenges of incomplete lineage sorting (ILS) and gene flow. Comprehensive genomic analyses indicated that the evolution of Papilionidae-specific conserved non-exonic elements (PSCNEs) and transcription factor binding sites (TFBSs) of patterning and transporter/cofactor genes, together with the rapid evolution of transporters/cofactors, likely promoted the origin and evolution of papiliochromes. These findings not only provide novel insights into the genomic basis of color diversity, especially papiliochrome origin in swallowtail butterflies, but also provide important data resources for exploring the evolution, ecology, and conservation of butterflies.
收录类别	sci
语种	英语
文献类型	期刊论文
条目标识符	http://ir.kiz.ac.cn/handle/152453/13783
专题	科研部门_遗传多样性基因组学研究组（张国捷）
推荐引用方式 GB/T 7714	He, JW,Zhang, R,Yang, J,et al. High-quality reference genomes of swallowtail butterflies provide insights into their coloration evolution[J]. ZOOLOGICAL RESEARCH,2022,43(3):367-379.
APA	He, JW.,Zhang, R.,Yang, J.,Chang, Z.,Zhu, LX.,...&Li, XY.(2022).High-quality reference genomes of swallowtail butterflies provide insights into their coloration evolution.ZOOLOGICAL RESEARCH,43(3),367-379.
MLA	He, JW,et al."High-quality reference genomes of swallowtail butterflies provide insights into their coloration evolution".ZOOLOGICAL RESEARCH 43.3(2022):367-379.

条目包含的文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
2023040724.pdf（4705KB）	期刊论文	出版稿	开放获取	CC BY-NC-SA	请求全文