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Identification of constrained sequence elements across 239 primate genomes 期刊论文
NATURE, 2024, 卷号: 625, 期号: 7996
作者:  Kuderna, LFK;  Ulirsch, JC;  Rashid, S;  Ameen, M;  Sundaram, L;  Hickey, G;  Cox, AJ;  Gao, H;  Kumar, A;  Aguet, F;  Christmas, MJ;  Clawson, H;  Haeussler, M;  Janiak, MC;  Kuhlwilm, M;  Orkin, JD;  Bataillon, T;  Manu, S;  Valenzuela, A;  Bergman, J;  Rouselle, M;  Silva, FE;  Agueda, L;  Blanc, J;  Gut, M;  de Vries, D;  Goodhead, I;  Harris, RA;  Raveendran, M;  Jensen, A;  Chuma, IS;  Horvath, JE;  Hvilsom, C;  Juan, D;  Frandsen, P;  Schraiber, JG;  de Melo, FR;  Bertuol, F;  Byrne, H;  Sampaio, I;  Farias, I;  Valsecchi, J;  Messias, M;  da Silva, MNF;  Trivedi, M;  Rossi, R;  Hrbek, T;  Andriaholinirina, N;  Rabarivola, CJ;  Zaramody, A;  Jolly, CJ;  Phillips-Conroy, J;  Wilkerson, G;  Abee, C;  Simmons, JH;  Fernandez-Duque, E;  Kanthaswamy, S;  Shiferaw, F;  Wu, DD;  Zhou, L;  Shao, Y;  Zhang, GJ;  Keyyu, JD;  Knauf, S;  Le, MD;  Lizano, E;  Merker, S;  Navarro, A;  Nadler, T;  Khor, CC;  Lee, J;  Tan, P;  Lim, WK;  Kitchener, AC;  Zinner, D;  Gut, I;  Melin, AD;  Guschanski, K;  Schierup, MH;  Beck, RMD;  Karakikes, I;  Wang, KC;  Umapathy, G;  Roos, C;  Boubli, JP;  Siepel, A;  Kundaje, A;  Paten, B;  Lindblad-Toh, K;  Rogers, J;  Bonet, TM;  Farh, KKH
Adobe PDF(11749Kb)  |  收藏  |  浏览/下载：23/0  |  提交时间：2025/04/09
The complete and fully-phased diploid genome of a male Han Chinese 期刊论文
CELL RESEARCH, 2023, 卷号: 33, 期号: 10, 页码: 745-761
作者:  Yang, CT;  Zhou, Y;  Song, YN;  Wu, DY;  Zeng, Y;  Nie, L;  Liu, PH;  Zhang, SL;  Chen, GJ;  Xu, JJ;  Zhou, HL;  Zhou, L;  Qian, XB;  Liu, CL;  Tan, SJ;  Zhou, CR;  Dai, W;  Xu, MY;  Qi, YW;  Wang, XB;  Guo, LD;  Fan, GY;  Wang, AJ;  Deng, Y;  Zhang, Y;  Jin, JZ;  He, YQ;  Guo, CX;  Guo, GJ;  Zhou, Q;  Xu, X;  Yang, HM;  Wang, J;  Xu, SH;  Mao, YF;  Jin, X;  Ruan, J;  Zhang, GJ
Adobe PDF(8547Kb)  |  收藏  |  浏览/下载：114/0  |  提交时间：2024/06/21
Standards recommendations for the Earth BioGenome Project 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 卷号: 119, 期号: 4
作者:  Lawniczak, MKN;  Durbin, R;  Flicek, P;  Lindblad-Toh, K;  Wei, XF;  Archibald, JM;  Baker, WJ;  Belov, K;  Blaxter, ML;  Bonet, TM;  Childers, AK;  Coddington, JA;  Crandall, KA;  Crawford, AJ;  Davey, RP;  Di Palma, F;  Fang, Q;  Haerty, W;  Hall, N;  Hoff, KJ;  Howe, K;  Jarvis, ED;  Johnson, WE;  Johnson, RN;  Kersey, PJ;  Liu, X;  Lopez, JV;  Myers, EW;  Pettersson, OV;  Phillippy, AM;  Poelchau, MF;  Pruitt, KD;  Rhie, A;  Castilla-Rubio, JC;  Sahu, SK;  Salmon, NA;  Soltis, PS;  Swarbreck, D;  Thibaud-Nissen, F;  Wang, SB;  Wegrzyn, JL;  Zhang, GJ;  Zhang, H;  Lewin, HA;  Richards, S
Adobe PDF(1336Kb)  |  收藏  |  浏览/下载：262/0  |  提交时间：2023/04/12
The Earth BioGenome Project 2020: Starting the clock 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 卷号: 119, 期号: 4
作者:  Lewin, HA;  Richards, S;  Aiden, EL;  Allende, ML;  Archibald, JM;  Balint, M;  Barker, KB;  Baumgartner, B;  Belov, K;  Bertorelle, G;  Blaxter, ML;  Cai, J;  Caperello, ND;  Carlson, K;  Castilla-Rubio, JC;  Chaw, SM;  Chen, L;  Childers, AK;  Coddington, JA;  Conde, DA;  Corominas, M;  Crandall, KA;  Crawford, AJ;  DiPalma, F;  Durbin, R;  Ebenezer, TE;  Edwards, SV;  Fedrigo, O;  Flicek, P;  Formenti, G;  Gibbs, RA;  Gilbert, MTP;  Goldstein, MM;  Graves, JM;  Greely, HT;  Grigoriev, IV;  Hackett, KJ;  Hall, N;  Haussler, D;  Helgen, KM;  Hogg, CJ;  Isobe, S;  Jakobsen, KS;  Janke, A;  Jarvis, ED;  Johnson, WE;  Jones, SJM;  Karlsson, EK;  Kersey, PJ;  Kim, JH;  Kress, WJ;  Kuraku, S;  Lawniczak, MKN;  Leebens-Mack, JH;  Li, XY;  Lindblad-Toh, K;  Liu, X;  Lopez, JV;  Marques-Bonet, T;  Mazard, S;  Mazet, JAK;  Mazzoni, CJ;  Myers, EW;  O'Neill, RJ;  Paez, S;  Park, H;  Robinson, GE;  Roquet, C;  Ryder, OA;  Sabir, JSM;  Shaffer, HB;  Shank, TM;  Sherkow, JS;  Soltis, PS;  Tang, BP;  Tedersoo, L;  Uliano-Silva, M;  Wang, K;  Wei, XF;  Wetzer, R;  Wilson, JL;  Xu, X;  Yang, HM;  Yoder, AD;  Zhang, GJ
Adobe PDF(1428Kb)  |  收藏  |  浏览/下载：1146/0  |  提交时间：2023/04/12
Towards complete and error-free genome assemblies of all vertebrate species 期刊论文
NATURE, 2021, 卷号: 592, 期号: 7856, 页码: 737-+
作者:  Rhie, A;  McCarthy, SA;  Fedrigo, O;  Damas, J;  Formenti, G;  Koren, S;  Uliano-Silva, M;  Chow, W;  Fungtammasan, A;  Kim, J;  Lee, C;  Ko, BJ;  Chaisson, M;  Gedman, GL;  Cantin, LJ;  Thibaud-Nissen, F;  Haggerty, L;  Bista, I;  Smith, M;  Haase, B;  Mountcastle, J;  Winkler, S;  Paez, S;  Howard, J;  Vernes, SC;  Lama, TM;  Grutzner, F;  Warren, WC;  Balakrishnan, CN;  Burt, D;  George, JM;  Biegler, MT;  Iorns, D;  Digby, A;  Eason, D;  Robertson, B;  Edwards, T;  Wilkinson, M;  Turner, G;  Meyer, A;  Kautt, AF;  Franchini, P;  Detrich, HW;  Svardal, H;  Wagner, M;  Naylor, GJP;  Pippel, M;  Malinsky, M;  Mooney, M;  Simbirsky, M;  Hannigan, BT;  Pesout, T;  Houck, M;  Misuraca, A;  Kingan, SB;  Hall, R;  Kronenberg, Z;  Sovi, I;  Dunn, C;  Ning, Z;  Hastie, A;  Lee, J;  Selvaraj, S;  Green, RE;  Putnam, NH;  Gut, I;  Ghurye, J;  Garrison, E;  Sims, Y;  Collins, J;  Pelan, S;  Torrance, J;  Tracey, A;  Wood, J;  Dagnew, RE;  Guan, D;  London, SE;  Clayton, DF;  Mello, CV;  Friedrich, SR;  Lovell, PV;  Osipova, E;  Al-Ajli, FO;  Secomandi, S;  Kim, H;  Theofanopoulou, C;  Hiller, M;  Zhou, Y;  Harris, RS;  Makova, KD;  Medvedev, P;  Hoffman, J;  Masterson, P;  Clark, K;  Martin, F;  Howe, K;  Flicek, P;  Walenz, BP;  Kwak, W;  Clawson, H;  Diekhans, M;  Nassar, L;  Paten, B;  Kraus, RHS;  Crawford, AJ;  Gilbert, MTP;  Zhang, G;  Venkatesh, B;  Murphy, RW;  Koepfli, KP;  Shapiro, B;  Johnson, WE;  Di Palma, F;  Marques-Bonet, T;  Teeling, EC;  Warnow, T;  Graves, JM;  Ryder, OA;  Haussler, D;  O'Brien, SJ;  Korlach, J;  Lewin, HA;  Howe, K;  Myers, EW;  Durbin, R;  Phillippy, AM;  Jarvis, ED
Adobe PDF(23042Kb)  |  收藏  |  浏览/下载：174/0  |  提交时间：2023/04/12
Response of an Afro-Palearctic bird migrant to glaciation cycles 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 卷号: 118, 期号: 52
作者:  Thorup, K;  Pedersen, L;  da Fonseca, RR;  Naimi, B;  Nogues-Bravo, D;  Krapp, M;  Manica, A;  Willemoes, M;  Sjoberg, S;  Feng, SH;  Chen, GJ;  Rey-Iglesia, A;  Campos, PF;  Beyer, R;  Araujo, MB;  Hansen, AJ;  Zhang, GJ;  Tottrup, AP;  Rahbek, C
Adobe PDF(1326Kb)  |  收藏  |  浏览/下载：86/0  |  提交时间：2023/04/12
Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 卷号: 118, 期号: 39
作者:  Feuerborn, TR;  Carmagnini, A;  Losey, RJ;  Nomokonova, T;  Askeyev, A;  Askeyev, I;  Askeyev, O;  Antipina, EE;  Appelt, M;  Bachura, OP;  Beglane, F;  Bradley, DG;  Daly, KG;  Gopalakrishnan, S;  Gregersen, KM;  Guo, CX;  Gusev, AV;  Jones, C;  Kosintsev, PA;  Kuzmin, YV;  Mattiangeli, V;  Perri, AR;  Plekhanov, AV;  Ramos-Madrigal, J;  Schmidt, AL;  Shaymuratova, D;  Smith, O;  Yavorskaya, LV;  Zhang, GJ;  Willerslev, E;  Meldgaard, M;  Gilbert, MTP;  Larson, G;  Dalen, L;  Hansen, AJ;  Sinding, MHS;  Frantz, L
Adobe PDF(1394Kb)  |  收藏  |  浏览/下载：85/0  |  提交时间：2023/04/12
Design and Characterization of a 52K SNP Chip for Goats 期刊论文
PLOS ONE, 2014, 卷号: 9, 期号: 1, 页码: e86227
作者:  Tosser-Klopp G*;  Bardou P;  Bouchez O;  Cabau C;  Crooijmans R;  Dong Y;  Donnadieu-Tonon C;  Eggen A;  Heuven HCM;  Jamli S;  Jiken AJ;  Klopp C;  Lawley CT;  McEwan J;  Martin P;  Moreno CR;  Mulsant P;  Nabihoudine I;  Pailhoux E;  Palhiere I;  Rupp R;  Sarry J;  Sayre BL;  Tircazes A;  Wang J;  Wang W;  Zhang WG*;  Tosser@toulouse.inra.fr;  atcgnmbi@aliyun.com
Adobe PDF(356Kb)  |  收藏  |  浏览/下载：157/3  |  提交时间：2014/03/07
Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation 期刊论文
GENES & DEVELOPMENT, 2013, 卷号: 27, 期号: 15, 页码: 1662-1679
作者:  Gao S;  Xiong J;  Zhang CC;  Yang RD;  Zhao M;  Molascon AJ;  Kwiatkowski SY;  Yuan DX;  Qin ZH;  Wen JF;  Kapler GM;  Andrews PC;  Miao W*;  Liu YF*;  miaowei@ihb.ac.cn;  yifan@med.umich.edu
Adobe PDF(2970Kb)  |  收藏  |  浏览/下载：241/4  |  提交时间：2013/09/13
Histone Methyltransferase  H3 Lys 27 Methylation  Replication Stress  Replication Elongation  Ssdna  Replication Origin  
Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication 期刊论文
BMC GENOMICS, 2013, 卷号: 14, 期号: X, 页码: e646
作者:  Xiang H;  Li X;  Dai FY;  Xu X;  Tan AJ;  Chen L;  Zhang GJ;  Ding Y;  Li QY;  Lian JM;  Willden A;  Guo QH;  Xia QY;  Wang J*;  Wang W*;  wangj@genomics.org.cn;  wwang@mail.kiz.ac.cn
Adobe PDF(1112Kb)  |  收藏  |  浏览/下载：147/3  |  提交时间：2013/11/25
Dnmt1  Comparative Methylomics  Silkworm  Domestication