A high-quality genome assembly of the Spectacled Fulvetta (Fulvetta ruficapilla) endemic to China

	A high-quality genome assembly of the Spectacled Fulvetta (Fulvetta ruficapilla) endemic to China
	Yan, C; Si, S; Chen, HM; Zhang, YT; Liu, LM; Wu, F; Wang, MS
	2024
发表期刊	SCIENTIFIC DATA
卷号	11 期号:1
摘要	The Spectacled Fulvetta (Fulvetta ruficapilla) is the type species of Fulvetta, an evolutionarily distinct group whose species show a high degree of sympatry in distribution and phenotypic convergence. To pave the way for insights into their adaptive evolution and speciation, we have assembled the first high quality reference genome for F. ruficapilla using high-fidelity (HiFi) long-read and Hi-C sequencing technologies. The resulting assembly spans a total of similar to 1.21 Gb with a contig N50 of 18.8 Mb and scaffold N50 of 75.9 Mb, and has a BUSCO completeness of 97.0%. The quality assessment suggests a high standard in base accuracy, continuity, and completeness of the assembly, comparable or close to that of Vertebrate Genomes Project. On this basis, we have annotated 23,774 protein-coding genes, of which 18,832 are functionally identified. The availability of this high-quality genome provides a solid foundation for the future studies of evolution and local adaptation in birds.
收录类别	SCI
语种	英语
文献类型	期刊论文
条目标识符	http://ir.kiz.ac.cn/handle/152453/14460
专题	科研部门_进化与生物多样性基因组学（王明山）
推荐引用方式 GB/T 7714	Yan, C,Si, S,Chen, HM,et al. A high-quality genome assembly of the Spectacled Fulvetta (Fulvetta ruficapilla) endemic to China[J]. SCIENTIFIC DATA,2024,11(1).
APA	Yan, C.,Si, S.,Chen, HM.,Zhang, YT.,Liu, LM.,...&Wang, MS.(2024).A high-quality genome assembly of the Spectacled Fulvetta (Fulvetta ruficapilla) endemic to China.SCIENTIFIC DATA,11(1).
MLA	Yan, C,et al."A high-quality genome assembly of the Spectacled Fulvetta (Fulvetta ruficapilla) endemic to China".SCIENTIFIC DATA 11.1(2024).

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WMS2025040204.pdf（2419KB）	期刊论文	出版稿	开放获取	CC BY-NC-SA	请求全文