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Molecular phylogenetics and biogeography of Lepus in Eastern Asia based on mitochondrial DNA sequences
Wu CH1,7; Wu JP3; Bunch TD4; Li QW5; Wang YX6; Zhang YP[*]1,2
2005
发表期刊MOLECULAR PHYLOGENETICS AND EVOLUTION
ISSN1055-7903
卷号37期号:1页码:45-61
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摘要

In spite of several classification attempts among taxa of the genus Lepus, phylogenetic relationships still remain poorly understood. Here, we present molecular genetic evidence that may resolve some of the current incongruities in the phylogeny of the leporids. The complete mitochondrial cytb, 12S genes, and parts of ND4 and control region fragments were sequenced to examine phylogenetic relationships among Chinese hare taxa and other leporids throughout the World using maximum parsimony, maximum likelihood, and Bayesian phylogenetic reconstruction approaches. Using reconstructed phylogenies, we observed that the Chinese hare is not a single monophyletic group as originally thought. Instead, the data infers that the genus Lepus is monophyletic with three unique species groups: North American, Eurasian, and African. Ancestral area analysis indicated that ancestral Lepus arose in North America and then dispersed into Eurasia via the Bering Land Bridge eventually extending to Africa. Brooks Parsimony analysis showed that dispersal events followed by subsequent speciation have occurred in other geographic areas as well and resulted in the rapid radiation and speciation of Lepus. A Bayesian relaxed molecular clock approach based on the continuous autocorrelation of evolutionary rates along branches estimated the divergence time between the three major groups within Lepus. The genus appears to have arisen approximately 10.76 MYA (+/-0.86 MYA), with most speciation events occurring during the Pliocene epoch (5.65+/-1.15 MYA approximately 1.12 +/- 0.47 MYA).

关键词Molecular Phylogenetics Lepus Taxonomy Biogeography
资助者This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z.
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资助者This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z. ; This work was supported by the State Key Basic Re- search and Development Plan (2003CB415105), the Chi- nese Academy of Sciences, the program for Key International S and T Cooperation Project of China (2001CB711103), Natural Science Foundation of Yun- nan Province, and National Natural Science Founda- tion of China to Y.P.Z.
文献类型期刊论文
条目标识符http://ir.kiz.ac.cn/handle/152453/4159
专题细胞与分子进化开放实验室
科研部门_分子进化与基因组多样性(张亚平)
其他
作者单位1.Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China
2.Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, Kunming 650091, China
3.College of Wildlife Resources, Northeast Forestry University, Haerbin 150040, China
4.Department of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT 84322, USA
5.Liaoning Normal University, Dalian 116029, China
6.Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China
7.Graduate School of the Chinese Academy of Sciences, China
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Wu CH,Wu JP,Bunch TD,et al. Molecular phylogenetics and biogeography of Lepus in Eastern Asia based on mitochondrial DNA sequences[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2005,37(1):45-61.
APA Wu CH,Wu JP,Bunch TD,Li QW,Wang YX,&Zhang YP[*].(2005).Molecular phylogenetics and biogeography of Lepus in Eastern Asia based on mitochondrial DNA sequences.MOLECULAR PHYLOGENETICS AND EVOLUTION,37(1),45-61.
MLA Wu CH,et al."Molecular phylogenetics and biogeography of Lepus in Eastern Asia based on mitochondrial DNA sequences".MOLECULAR PHYLOGENETICS AND EVOLUTION 37.1(2005):45-61.
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