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An Estimation of Erinaceidae Phylogeny: A Combined Analysis Approach
He K1,2; Chen JH1,2; Gould GC3,4; Yamaguchi N5; Ai HS6; Wang YX1; Zhang YP1; Jiang XL*1
2012
发表期刊PLOS ONE
卷号7期号:6页码:e39304
摘要

Background: Erinaceidae is a family of small mammals that include the spiny hedgehogs (Erinaceinae) and the silky-furred moonrats and gymnures (Galericinae). These animals are widely distributed across Eurasia and Africa, from the tundra to the tropics and the deserts to damp forests. The importance of these animals lies in the fact that they are the oldest known living placental mammals, which are well represented in the fossil record, a rarity fact given their size and vulnerability to destruction during fossilization. Although the Family has been well studied, their phylogenetic relationships remain controversial. To test previous phylogenetic hypotheses, we combined molecular and morphological data sets, including representatives of all the genera.

Methodology and Principal Findings: We included in the analyses 3,218 bp mitochondrial genes, one hundred and thirty-five morphological characters, twenty-two extant erinaceid taxa, and five outgroup taxa. Phylogenetic relationships were reconstructed using both partitioned and combined data sets. As in previous analyses, our results strongly support the monophyly of both subfamilies (Galericinae and Erinaceinae), the Hylomys group (to include Neotetracus and Neohylomys), and a sister-relationship of Atelerix and Erinaceus. As well, we verified that the extremely long branch lengths within the Galericinae are consistent with their fossil records. Not surprisingly, we found significant incongruence between the phylogenetic signals of the genes and the morphological characters, specifically in the case of Hylomys parvus, Mesechinus, and relationships between Hemiechinus and Paraechinus.

Conclusions: Although we discovered new clues to understanding the evolutionary relationships within the Erinaceidae, our results nonetheless, strongly suggest that more robust analyses employing more complete taxon sampling (to include fossils) and multiple unlinked genes would greatly enhance our understanding of the Erinaceidae. Until then, we have left the nomenclature of the taxa unchanged; hence it does not yet precisely reflect their phylogenetic relationships or the depth of their genetic diversity.

资助者This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251)
收录类别SCI
语种英语
资助者This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251) ; This work was supported by grants from the National Basic Research Program of China (2007CB411600), the National Natural Science Foundation of China (30770251)
WOS记录号WOS:000305693200059
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被引频次:23[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.kiz.ac.cn/handle/152453/7071
专题科研部门_兽类生态与进化(蒋学龙)
遗传资源与进化国家重点实验室
科研部门_分子进化与基因组多样性(张亚平)
作者单位1.State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China
2.Graduate University of Chinese Academy of Sciences, Beijing, China
3.University of Connecticut, Department of Ecology and Evolutionary Biology, Stamford, Connecticut, United States of America
4.Bruce Museum, Greenwich, Connecticut, United States of America
5.Department of Biological & Environmental Sciences, Qatar University, Doha, Qatar
6.Baoshan Administrative Bureau, Gaoligong National Nature Reserve, Baoshan, China
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He K,Chen JH,Gould GC,et al. An Estimation of Erinaceidae Phylogeny: A Combined Analysis Approach[J]. PLOS ONE,2012,7(6):e39304.
APA He K.,Chen JH.,Gould GC.,Yamaguchi N.,Ai HS.,...&Jiang XL*.(2012).An Estimation of Erinaceidae Phylogeny: A Combined Analysis Approach.PLOS ONE,7(6),e39304.
MLA He K,et al."An Estimation of Erinaceidae Phylogeny: A Combined Analysis Approach".PLOS ONE 7.6(2012):e39304.
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