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An atlas of regulatory elements in chicken: A resource for chicken genetics and genomics 期刊论文
SCIENCE ADVANCES, 2023, 卷号: 9, 期号: 18
作者:  Pan, ZY;  Wang, Y;  Wang, MS;  Wang, YZ;  Zhu, XN;  Gu, SW;  Zhong, CH;  An, LQ;  Shan, MZ;  Damas, J;  Halstead, MM;  Guan, DL;  Trakooljul, N;  Wimmers, K;  Bi, Y;  Wu, S;  Delany, ME;  Bai, XC;  Cheng, HH;  Sun, CJ;  Yang, N;  Hu, XX;  Lewin, HA;  Fang, LZ;  Zhou, HJ
Adobe PDF(2462Kb)  |  收藏  |  浏览/下载：1661/0  |  提交时间：2024/08/19
Standards recommendations for the Earth BioGenome Project 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 卷号: 119, 期号: 4
作者:  Lawniczak, MKN;  Durbin, R;  Flicek, P;  Lindblad-Toh, K;  Wei, XF;  Archibald, JM;  Baker, WJ;  Belov, K;  Blaxter, ML;  Bonet, TM;  Childers, AK;  Coddington, JA;  Crandall, KA;  Crawford, AJ;  Davey, RP;  Di Palma, F;  Fang, Q;  Haerty, W;  Hall, N;  Hoff, KJ;  Howe, K;  Jarvis, ED;  Johnson, WE;  Johnson, RN;  Kersey, PJ;  Liu, X;  Lopez, JV;  Myers, EW;  Pettersson, OV;  Phillippy, AM;  Poelchau, MF;  Pruitt, KD;  Rhie, A;  Castilla-Rubio, JC;  Sahu, SK;  Salmon, NA;  Soltis, PS;  Swarbreck, D;  Thibaud-Nissen, F;  Wang, SB;  Wegrzyn, JL;  Zhang, GJ;  Zhang, H;  Lewin, HA;  Richards, S
Adobe PDF(1336Kb)  |  收藏  |  浏览/下载：262/0  |  提交时间：2023/04/12
The Earth BioGenome Project 2020: Starting the clock 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 卷号: 119, 期号: 4
作者:  Lewin, HA;  Richards, S;  Aiden, EL;  Allende, ML;  Archibald, JM;  Balint, M;  Barker, KB;  Baumgartner, B;  Belov, K;  Bertorelle, G;  Blaxter, ML;  Cai, J;  Caperello, ND;  Carlson, K;  Castilla-Rubio, JC;  Chaw, SM;  Chen, L;  Childers, AK;  Coddington, JA;  Conde, DA;  Corominas, M;  Crandall, KA;  Crawford, AJ;  DiPalma, F;  Durbin, R;  Ebenezer, TE;  Edwards, SV;  Fedrigo, O;  Flicek, P;  Formenti, G;  Gibbs, RA;  Gilbert, MTP;  Goldstein, MM;  Graves, JM;  Greely, HT;  Grigoriev, IV;  Hackett, KJ;  Hall, N;  Haussler, D;  Helgen, KM;  Hogg, CJ;  Isobe, S;  Jakobsen, KS;  Janke, A;  Jarvis, ED;  Johnson, WE;  Jones, SJM;  Karlsson, EK;  Kersey, PJ;  Kim, JH;  Kress, WJ;  Kuraku, S;  Lawniczak, MKN;  Leebens-Mack, JH;  Li, XY;  Lindblad-Toh, K;  Liu, X;  Lopez, JV;  Marques-Bonet, T;  Mazard, S;  Mazet, JAK;  Mazzoni, CJ;  Myers, EW;  O'Neill, RJ;  Paez, S;  Park, H;  Robinson, GE;  Roquet, C;  Ryder, OA;  Sabir, JSM;  Shaffer, HB;  Shank, TM;  Sherkow, JS;  Soltis, PS;  Tang, BP;  Tedersoo, L;  Uliano-Silva, M;  Wang, K;  Wei, XF;  Wetzer, R;  Wilson, JL;  Xu, X;  Yang, HM;  Yoder, AD;  Zhang, GJ
Adobe PDF(1428Kb)  |  收藏  |  浏览/下载：1146/0  |  提交时间：2023/04/12
Towards complete and error-free genome assemblies of all vertebrate species 期刊论文
NATURE, 2021, 卷号: 592, 期号: 7856, 页码: 737-+
作者:  Rhie, A;  McCarthy, SA;  Fedrigo, O;  Damas, J;  Formenti, G;  Koren, S;  Uliano-Silva, M;  Chow, W;  Fungtammasan, A;  Kim, J;  Lee, C;  Ko, BJ;  Chaisson, M;  Gedman, GL;  Cantin, LJ;  Thibaud-Nissen, F;  Haggerty, L;  Bista, I;  Smith, M;  Haase, B;  Mountcastle, J;  Winkler, S;  Paez, S;  Howard, J;  Vernes, SC;  Lama, TM;  Grutzner, F;  Warren, WC;  Balakrishnan, CN;  Burt, D;  George, JM;  Biegler, MT;  Iorns, D;  Digby, A;  Eason, D;  Robertson, B;  Edwards, T;  Wilkinson, M;  Turner, G;  Meyer, A;  Kautt, AF;  Franchini, P;  Detrich, HW;  Svardal, H;  Wagner, M;  Naylor, GJP;  Pippel, M;  Malinsky, M;  Mooney, M;  Simbirsky, M;  Hannigan, BT;  Pesout, T;  Houck, M;  Misuraca, A;  Kingan, SB;  Hall, R;  Kronenberg, Z;  Sovi, I;  Dunn, C;  Ning, Z;  Hastie, A;  Lee, J;  Selvaraj, S;  Green, RE;  Putnam, NH;  Gut, I;  Ghurye, J;  Garrison, E;  Sims, Y;  Collins, J;  Pelan, S;  Torrance, J;  Tracey, A;  Wood, J;  Dagnew, RE;  Guan, D;  London, SE;  Clayton, DF;  Mello, CV;  Friedrich, SR;  Lovell, PV;  Osipova, E;  Al-Ajli, FO;  Secomandi, S;  Kim, H;  Theofanopoulou, C;  Hiller, M;  Zhou, Y;  Harris, RS;  Makova, KD;  Medvedev, P;  Hoffman, J;  Masterson, P;  Clark, K;  Martin, F;  Howe, K;  Flicek, P;  Walenz, BP;  Kwak, W;  Clawson, H;  Diekhans, M;  Nassar, L;  Paten, B;  Kraus, RHS;  Crawford, AJ;  Gilbert, MTP;  Zhang, G;  Venkatesh, B;  Murphy, RW;  Koepfli, KP;  Shapiro, B;  Johnson, WE;  Di Palma, F;  Marques-Bonet, T;  Teeling, EC;  Warnow, T;  Graves, JM;  Ryder, OA;  Haussler, D;  O'Brien, SJ;  Korlach, J;  Lewin, HA;  Howe, K;  Myers, EW;  Durbin, R;  Phillippy, AM;  Jarvis, ED
Adobe PDF(23042Kb)  |  收藏  |  浏览/下载：174/0  |  提交时间：2023/04/12
Platypus and echidna genomes reveal mammalian biology and evolution 期刊论文
NATURE, 2021, 卷号: 592, 期号: 7856, 页码: 756-+
作者:  Zhou, Y;  Shearwin-Whyatt, L;  Li, J;  Song, ZZ;  Hayakawa, T;  Stevens, D;  Fenelon, JC;  Peel, E;  Cheng, YY;  Pajpach, F;  Bradley, N;  Suzuki, H;  Nikaido, M;  Damas, J;  Daish, T;  Perry, T;  Zhu, ZX;  Geng, YC;  Rhie, A;  Sims, Y;  Wood, J;  Haase, B;  Mountcastle, J;  Fedrigo, O;  Li, QY;  Yang, HM;  Wang, J;  Johnston, SD;  Phillippy, AM;  Howe, K;  Jarvis, ED;  Ryder, OA;  Kaessmann, H;  Donnelly, P;  Korlach, J;  Lewin, HA;  Graves, J;  Belov, K;  Renfree, MB;  Grutzner, F;  Zhou, Q;  Zhang, GJ
Adobe PDF(12344Kb)  |  收藏  |  浏览/下载：50/0  |  提交时间：2023/04/12
Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 576-589
作者:  Farre, M;  Kim, J;  Proskuryakova, AA;  Zhang, Y;  Kulemzina, AI;  Li, QY;  Zhou, Y;  Xiong, YQ;  Johnson, JL;  Perelman, PL;  Johnson, WE;  Warren, WC;  Kukekova, AV;  Zhang, GJ;  O'Brien, SJ;  Ryder, OA;  Graphodatsky, AS;  Ma, J;  Lewin, HA;  Larkin, DM
Adobe PDF(988Kb)  |  收藏  |  浏览/下载：1351/0  |  提交时间：2019/11/07
Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 576-589
作者:  Farre, M;  Kim, J;  Proskuryakova, AA;  Zhang, Y;  Kulemzina, AI;  Li, QY;  Zhou, Y;  Xiong, YQ;  Johnson, JL;  Perelman, PL;  Johnson, WE;  Warren, WC;  Kukekova, AV;  Zhang, GJ;  O'Brien, SJ;  Ryder, OA;  Graphodatsky, AS;  Ma, J;  Lewin, HA;  Larkin, DM
Adobe PDF(2175Kb)  |  收藏  |  浏览/下载：133/0  |  提交时间：2023/04/12
An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi) 期刊论文
GIGASCIENCE, 2019, 卷号: 8, 期号: 8, 页码: -
作者:  Farre, M;  Li, QY;  Darolti, I;  Zhou, Y;  Damas, J;  Proskuryakova, AA;  Kulemzina, AI;  Chemnick, LG;  Kim, J;  Ryder, OA;  Ma, J;  Graphodatsky, AS;  Zhang, GJ;  Larkin, DM;  Lewin, HA
Adobe PDF(2796Kb)  |  收藏  |  浏览/下载：177/0  |  提交时间：2021/11/18
A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert 期刊论文
GIGASCIENCE, 2019, 卷号: 8, 期号: 2
作者:  Farre, M;  Li, QY;  Zhou, Y;  Damas, J;  Chemnick, LG;  Kim, J;  Ryder, OA;  Ma, J;  Zhang, GJ;  Larkin, DM;  Lewin, HA
Adobe PDF(2395Kb)  |  收藏  |  浏览/下载：56/0  |  提交时间：2019/11/04
The yak genome and adaptation to life at high altitude 期刊论文
NATURE GENETICS, 2012, 卷号: 44, 期号: 8, 页码: 946-
作者:  Qiu, Q;  Zhang, GJ;  Ma, T;  Qian, WB;  Wang, JY;  Ye, ZQ;  Cao, CC;  Hu, QJ;  Kim, J;  Larkin, DM;  Auvil, L;  Capitanu, B;  Ma, J;  Lewin, HA;  Qian, XJ;  Lang, YS;  Zhou, R;  Wang, LZ;  Wang, K;  Xia, JQ;  Liao, SG;  Pan, SK;  Lu, X;  Hou, HL;  Wang, Y;  Zang, XT;  Yin, Y;  Ma, H;  Zhang, J;  Wang, ZF;  Zhang, YM;  Zhang, DW;  Yonezawa, T;  Hasegawa, M;  Zhong, Y;  Liu, WB;  Zhang, Y;  Huang, ZY;  Zhang, SX;  Long, RJ;  Yang, HM;  Wang, J;  Lenstra, JA;  Cooper, DN;  Wu, Y;  Wang, J;  Shi, P;  Wang, J;  Liu, JQ
Adobe PDF(864Kb)  |  收藏  |  浏览/下载：1623/0  |  提交时间：2023/02/24