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The Earth BioGenome Project 2020: Starting the clock 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 卷号: 119, 期号: 4
作者:  Lewin, HA;  Richards, S;  Aiden, EL;  Allende, ML;  Archibald, JM;  Balint, M;  Barker, KB;  Baumgartner, B;  Belov, K;  Bertorelle, G;  Blaxter, ML;  Cai, J;  Caperello, ND;  Carlson, K;  Castilla-Rubio, JC;  Chaw, SM;  Chen, L;  Childers, AK;  Coddington, JA;  Conde, DA;  Corominas, M;  Crandall, KA;  Crawford, AJ;  DiPalma, F;  Durbin, R;  Ebenezer, TE;  Edwards, SV;  Fedrigo, O;  Flicek, P;  Formenti, G;  Gibbs, RA;  Gilbert, MTP;  Goldstein, MM;  Graves, JM;  Greely, HT;  Grigoriev, IV;  Hackett, KJ;  Hall, N;  Haussler, D;  Helgen, KM;  Hogg, CJ;  Isobe, S;  Jakobsen, KS;  Janke, A;  Jarvis, ED;  Johnson, WE;  Jones, SJM;  Karlsson, EK;  Kersey, PJ;  Kim, JH;  Kress, WJ;  Kuraku, S;  Lawniczak, MKN;  Leebens-Mack, JH;  Li, XY;  Lindblad-Toh, K;  Liu, X;  Lopez, JV;  Marques-Bonet, T;  Mazard, S;  Mazet, JAK;  Mazzoni, CJ;  Myers, EW;  O'Neill, RJ;  Paez, S;  Park, H;  Robinson, GE;  Roquet, C;  Ryder, OA;  Sabir, JSM;  Shaffer, HB;  Shank, TM;  Sherkow, JS;  Soltis, PS;  Tang, BP;  Tedersoo, L;  Uliano-Silva, M;  Wang, K;  Wei, XF;  Wetzer, R;  Wilson, JL;  Xu, X;  Yang, HM;  Yoder, AD;  Zhang, GJ
Adobe PDF(1428Kb)  |  收藏  |  浏览/下载：1146/0  |  提交时间：2023/04/12
Towards complete and error-free genome assemblies of all vertebrate species 期刊论文
NATURE, 2021, 卷号: 592, 期号: 7856, 页码: 737-+
作者:  Rhie, A;  McCarthy, SA;  Fedrigo, O;  Damas, J;  Formenti, G;  Koren, S;  Uliano-Silva, M;  Chow, W;  Fungtammasan, A;  Kim, J;  Lee, C;  Ko, BJ;  Chaisson, M;  Gedman, GL;  Cantin, LJ;  Thibaud-Nissen, F;  Haggerty, L;  Bista, I;  Smith, M;  Haase, B;  Mountcastle, J;  Winkler, S;  Paez, S;  Howard, J;  Vernes, SC;  Lama, TM;  Grutzner, F;  Warren, WC;  Balakrishnan, CN;  Burt, D;  George, JM;  Biegler, MT;  Iorns, D;  Digby, A;  Eason, D;  Robertson, B;  Edwards, T;  Wilkinson, M;  Turner, G;  Meyer, A;  Kautt, AF;  Franchini, P;  Detrich, HW;  Svardal, H;  Wagner, M;  Naylor, GJP;  Pippel, M;  Malinsky, M;  Mooney, M;  Simbirsky, M;  Hannigan, BT;  Pesout, T;  Houck, M;  Misuraca, A;  Kingan, SB;  Hall, R;  Kronenberg, Z;  Sovi, I;  Dunn, C;  Ning, Z;  Hastie, A;  Lee, J;  Selvaraj, S;  Green, RE;  Putnam, NH;  Gut, I;  Ghurye, J;  Garrison, E;  Sims, Y;  Collins, J;  Pelan, S;  Torrance, J;  Tracey, A;  Wood, J;  Dagnew, RE;  Guan, D;  London, SE;  Clayton, DF;  Mello, CV;  Friedrich, SR;  Lovell, PV;  Osipova, E;  Al-Ajli, FO;  Secomandi, S;  Kim, H;  Theofanopoulou, C;  Hiller, M;  Zhou, Y;  Harris, RS;  Makova, KD;  Medvedev, P;  Hoffman, J;  Masterson, P;  Clark, K;  Martin, F;  Howe, K;  Flicek, P;  Walenz, BP;  Kwak, W;  Clawson, H;  Diekhans, M;  Nassar, L;  Paten, B;  Kraus, RHS;  Crawford, AJ;  Gilbert, MTP;  Zhang, G;  Venkatesh, B;  Murphy, RW;  Koepfli, KP;  Shapiro, B;  Johnson, WE;  Di Palma, F;  Marques-Bonet, T;  Teeling, EC;  Warnow, T;  Graves, JM;  Ryder, OA;  Haussler, D;  O'Brien, SJ;  Korlach, J;  Lewin, HA;  Howe, K;  Myers, EW;  Durbin, R;  Phillippy, AM;  Jarvis, ED
Adobe PDF(23042Kb)  |  收藏  |  浏览/下载：174/0  |  提交时间：2023/04/12
Ancient and modem genomes unravel the evolutionary history of the rhinoceros family 期刊论文
CELL, 2021, 卷号: 184, 期号: 19, 页码: 4874-+
作者:  Liu, SL;  Westbury, MV;  Dussex, N;  Mitchell, KJ;  Sinding, MHS;  Heintzman, PD;  Duchene, DA;  Kapp, JD;  von Seth, J;  Heiniger, H;  Sanchez-Barreiro, F;  Margaryan, A;  Andre-Olsen, R;  De Cahsan, B;  Meng, GL;  Yang, CT;  Chen, L;  van der Valk, T;  Moodley, Y;  Rookmaaker, K;  Bruford, MW;  Ryder, O;  Steiner, C;  Bruins-van Sonsbeek, LGR;  Vartanyan, S;  Guo, CX;  Cooper, A;  Kosintsev, P;  Kirillova, I;  Lister, AM;  Marques-Bonet, T;  Gopalakrishnan, S;  Dunn, RR;  Lorenzen, ED;  Shapiro, B;  Zhang, GJ;  Antoine, PO;  Dalen, L;  Gilbert, MTP
Adobe PDF(6210Kb)  |  收藏  |  浏览/下载：1022/0  |  提交时间：2023/04/12
Platypus and echidna genomes reveal mammalian biology and evolution 期刊论文
NATURE, 2021, 卷号: 592, 期号: 7856, 页码: 756-+
作者:  Zhou, Y;  Shearwin-Whyatt, L;  Li, J;  Song, ZZ;  Hayakawa, T;  Stevens, D;  Fenelon, JC;  Peel, E;  Cheng, YY;  Pajpach, F;  Bradley, N;  Suzuki, H;  Nikaido, M;  Damas, J;  Daish, T;  Perry, T;  Zhu, ZX;  Geng, YC;  Rhie, A;  Sims, Y;  Wood, J;  Haase, B;  Mountcastle, J;  Fedrigo, O;  Li, QY;  Yang, HM;  Wang, J;  Johnston, SD;  Phillippy, AM;  Howe, K;  Jarvis, ED;  Ryder, OA;  Kaessmann, H;  Donnelly, P;  Korlach, J;  Lewin, HA;  Graves, J;  Belov, K;  Renfree, MB;  Grutzner, F;  Zhou, Q;  Zhang, GJ
Adobe PDF(12344Kb)  |  收藏  |  浏览/下载：50/0  |  提交时间：2023/04/12
Dense sampling of bird diversity increases power of comparative genomics 期刊论文
NATURE, 2020, 卷号: 587, 期号: 7833, 页码: 252
作者:  Feng, Shaohong;  Stiller, Josefin;  Deng, Yuan;  Armstrong, Joel;  Fang, Qi;  Reeve, Andrew Hart;  Xie, Duo;  Chen, Guangji;  Guo, Chunxue;  Faircloth, Brant C.;  Petersen, Bent;  Wang, Zongji;  Zhou, Qi;  Diekhans, Mark;  Chen, Wanjun;  Andreu-Sanchez, Sergio;  Margaryan, Ashot;  Howard, Jason Travis;  Parent, Carole;  Pacheco, George;  Sinding, Mikkel-Holger S.;  Puetz, Lara;  Cavill, Emily;  Ribeiro, Angela M.;  Eckhart, Leopold;  Fjeldsa, Jon;  Hosner, Peter A.;  Brumfield, Robb T.;  Christidis, Les;  Bertelsen, Mads F.;  Sicheritz-Ponten, Thomas;  Tietze, Dieter Thomas;  Robertson, Bruce C.;  Song, Gang;  Borgia, Gerald;  Claramunt, Santiago;  Lovette, Irby J.;  Cowen, Saul J.;  Njoroge, Peter;  Dumbacher, John Philip;  Ryder, Oliver A.;  Fuchs, Jerome;  Bunce, Michael;  Burt, David W.;  Cracraft, Joel;  Meng, Guanliang;  Hackett, Shannon J.;  Ryan, Peter G.;  Jonsson, Knud Andreas;  Jamieson, Ian G.;  da Fonseca, Rute R.;  Braun, Edward L.;  Houde, Peter;  Mirarab, Siavash;  Suh, Alexander;  Hansson, Bengt;  Ponnikas, Suvi;  Sigeman, Hanna;  Stervander, Martin;  Frandsen, Paul B.;  van der Zwan, Henriette;  van der Sluis, Rencia;  Visser, Carina;  Balakrishnan, Christopher N.;  Clark, Andrew G.;  Fitzpatrick, John W.;  Bowman, Reed;  Chen, Nancy;  Cloutier, Alison;  Sackton, Timothy B.;  Edwards, Scott V.;  Foote, Dustin J.;  Shakya, Subir B.;  Sheldon, Frederick H.;  Vignal, Alain;  Soares, Andre E. R.;  Shapiro, Beth;  Gonzalez-Solis, Jacob;  Ferrer-Obiol, Joan;  Rozas, Julio;  Riutort, Marta;  Tigano, Anna;  Friesen, Vicki;  Dalen, Love;  Urrutia, Araxi O.;  Szekely, Tamas;  Liu, Yang;  Campana, Michael G.;  Corvelo, Andre;  Fleischer, Robert C.;  Rutherford, Kim M.;  Gemmell, Neil J.;  Dussex, Nicolas;  Mouritsen, Henrik;  Thiele, Nadine;  Delmore, Kira;  Liedvogel, Miriam;  Franke, Andre;  Hoeppner, Marc P.;  Krone, Oliver;  Fudickar, Adam M.;  Mila, Borja;  Ketterson, Ellen D.;  Fidler, Andrew Eric;  Friis, Guillermo;  Parody-Merino, Angela M.;  Battley, Phil F.;  Cox, Murray P.;  Lima, Nicholas Costa Barroso;  Prosdocimi, Francisco;  Parchman, Thomas Lee;  Schlinger, Barney A.;  Loiselle, Bette A.;  Blake, John G.;  Lim, Haw Chuan;  Day, Lainy B.;  Fuxjager, Matthew J.;  Baldwin, Maude W.;  Braun, Michael J.;  Wirthlin, Morgan;  Dikow, Rebecca B.;  Ryder, T. Brandt;  Camenisch, Glauco;  Keller, Lukas F.;  DaCosta, Jeffrey M.;  Hauber, Mark E.;  Louder, Matthew I. M.;  Witt, Christopher C.;  McGuire, Jimmy A.;  Mudge, Joann;  Megna, Libby C.;  Carling, Matthew D.;  Wang, Biao;  Taylor, Scott A.;  Del-Rio, Glaucia;  Aleixo, Alexandre;  Vasconcelos, Ana Tereza Ribeiro;  Mello, Claudio V.;  Weir, Jason T.;  Haussler, David;  Li, Qiye;  Yang, Huanming;  Wang, Jian;  Lei, Fumin;  Rahbek, Carsten;  Gilbert, M. Thomas P.;  Graves, Gary R.;  Jarvis, Erich D.;  Paten, Benedict;  Zhang, Guojie
Adobe PDF(11384Kb)  |  收藏  |  浏览/下载：159/0  |  提交时间：2021/11/09
Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 576-589
作者:  Farre, M;  Kim, J;  Proskuryakova, AA;  Zhang, Y;  Kulemzina, AI;  Li, QY;  Zhou, Y;  Xiong, YQ;  Johnson, JL;  Perelman, PL;  Johnson, WE;  Warren, WC;  Kukekova, AV;  Zhang, GJ;  O'Brien, SJ;  Ryder, OA;  Graphodatsky, AS;  Ma, J;  Lewin, HA;  Larkin, DM
Adobe PDF(988Kb)  |  收藏  |  浏览/下载：1351/0  |  提交时间：2019/11/07
Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 576-589
作者:  Farre, M;  Kim, J;  Proskuryakova, AA;  Zhang, Y;  Kulemzina, AI;  Li, QY;  Zhou, Y;  Xiong, YQ;  Johnson, JL;  Perelman, PL;  Johnson, WE;  Warren, WC;  Kukekova, AV;  Zhang, GJ;  O'Brien, SJ;  Ryder, OA;  Graphodatsky, AS;  Ma, J;  Lewin, HA;  Larkin, DM
Adobe PDF(2175Kb)  |  收藏  |  浏览/下载：133/0  |  提交时间：2023/04/12
Tissue sampling methods and standards for vertebrate genomics 期刊论文
GIGASCIENCE, 2012, 卷号: 1, 期号: X, 页码: e8
作者:  Wong PBY;  Wiley EO;  Johnson WE;  Ryder OA;  O'Brien SJ;  Haussler D;  Koepfli KP;  Houck ML;  Perelman P;  Mastromonaco G;  Bentley AC;  Venkatesh B;  Zhang YP;  Murphy RW*
Adobe PDF(308Kb)  |  收藏  |  浏览/下载：352/3  |  提交时间：2013/09/16
Genome 10k  Sequencing  Vertebrates  Genomics  Tissue Sampling  Tissue Storage  Cell Line  Tissue  Culture  Rna  Dna  
Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species 期刊论文
JOURNAL OF HEREDITY, 2009, 卷号: 100, 期号: 6, 页码: 659-674
作者:  Haussler D;  O'Brien SJ;  Ryder OA;  Barker FK;  Clamp M;  Crawford AJ;  Hanner R;  Hanotte O;  Johnson WE;  McGuire JA;  Miller W;  Murphy RW;  Zhang YP
Adobe PDF(1415Kb)  |  收藏  |  浏览/下载：176/5  |  提交时间：2010/08/24
Ancestral State Reconstruction  Comparative Genomics  G10k  Molecular Evolution  Species Conservation  Vertebrate Biology  
Mitochondrial control region and population genetic patterns of Nycticebus bengalensis and N-Pygmaeus 期刊论文
INTERNATIONAL JOURNAL OF PRIMATOLOGY, 2007, 卷号: 28, 期号: 4, 页码: 791-799
作者:  Pan D;  Chen JH;  Groves C;  Wang YX;  Narushima E;  Fitch-Snyder H;  Crow P;  Jinggong X;  Thanh VN;  Ryder O;  Chemnick L;  Zhang HW;  Fu YX;  Zhang YP*
Adobe PDF(191Kb)  |  收藏  |  浏览/下载：148/3  |  提交时间：2010/08/24
Bengal Slow Loris  Pygmy Slow Loris  Population Genetics  Mitochondrial Control Region