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The Earth BioGenome Project 2020: Starting the clock 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 卷号: 119, 期号: 4
作者:  Lewin, HA;  Richards, S;  Aiden, EL;  Allende, ML;  Archibald, JM;  Balint, M;  Barker, KB;  Baumgartner, B;  Belov, K;  Bertorelle, G;  Blaxter, ML;  Cai, J;  Caperello, ND;  Carlson, K;  Castilla-Rubio, JC;  Chaw, SM;  Chen, L;  Childers, AK;  Coddington, JA;  Conde, DA;  Corominas, M;  Crandall, KA;  Crawford, AJ;  DiPalma, F;  Durbin, R;  Ebenezer, TE;  Edwards, SV;  Fedrigo, O;  Flicek, P;  Formenti, G;  Gibbs, RA;  Gilbert, MTP;  Goldstein, MM;  Graves, JM;  Greely, HT;  Grigoriev, IV;  Hackett, KJ;  Hall, N;  Haussler, D;  Helgen, KM;  Hogg, CJ;  Isobe, S;  Jakobsen, KS;  Janke, A;  Jarvis, ED;  Johnson, WE;  Jones, SJM;  Karlsson, EK;  Kersey, PJ;  Kim, JH;  Kress, WJ;  Kuraku, S;  Lawniczak, MKN;  Leebens-Mack, JH;  Li, XY;  Lindblad-Toh, K;  Liu, X;  Lopez, JV;  Marques-Bonet, T;  Mazard, S;  Mazet, JAK;  Mazzoni, CJ;  Myers, EW;  O'Neill, RJ;  Paez, S;  Park, H;  Robinson, GE;  Roquet, C;  Ryder, OA;  Sabir, JSM;  Shaffer, HB;  Shank, TM;  Sherkow, JS;  Soltis, PS;  Tang, BP;  Tedersoo, L;  Uliano-Silva, M;  Wang, K;  Wei, XF;  Wetzer, R;  Wilson, JL;  Xu, X;  Yang, HM;  Yoder, AD;  Zhang, GJ
Adobe PDF(1428Kb)  |  收藏  |  浏览/下载：1123/0  |  提交时间：2023/04/12
Towards complete and error-free genome assemblies of all vertebrate species 期刊论文
NATURE, 2021, 卷号: 592, 期号: 7856, 页码: 737-+
作者:  Rhie, A;  McCarthy, SA;  Fedrigo, O;  Damas, J;  Formenti, G;  Koren, S;  Uliano-Silva, M;  Chow, W;  Fungtammasan, A;  Kim, J;  Lee, C;  Ko, BJ;  Chaisson, M;  Gedman, GL;  Cantin, LJ;  Thibaud-Nissen, F;  Haggerty, L;  Bista, I;  Smith, M;  Haase, B;  Mountcastle, J;  Winkler, S;  Paez, S;  Howard, J;  Vernes, SC;  Lama, TM;  Grutzner, F;  Warren, WC;  Balakrishnan, CN;  Burt, D;  George, JM;  Biegler, MT;  Iorns, D;  Digby, A;  Eason, D;  Robertson, B;  Edwards, T;  Wilkinson, M;  Turner, G;  Meyer, A;  Kautt, AF;  Franchini, P;  Detrich, HW;  Svardal, H;  Wagner, M;  Naylor, GJP;  Pippel, M;  Malinsky, M;  Mooney, M;  Simbirsky, M;  Hannigan, BT;  Pesout, T;  Houck, M;  Misuraca, A;  Kingan, SB;  Hall, R;  Kronenberg, Z;  Sovi, I;  Dunn, C;  Ning, Z;  Hastie, A;  Lee, J;  Selvaraj, S;  Green, RE;  Putnam, NH;  Gut, I;  Ghurye, J;  Garrison, E;  Sims, Y;  Collins, J;  Pelan, S;  Torrance, J;  Tracey, A;  Wood, J;  Dagnew, RE;  Guan, D;  London, SE;  Clayton, DF;  Mello, CV;  Friedrich, SR;  Lovell, PV;  Osipova, E;  Al-Ajli, FO;  Secomandi, S;  Kim, H;  Theofanopoulou, C;  Hiller, M;  Zhou, Y;  Harris, RS;  Makova, KD;  Medvedev, P;  Hoffman, J;  Masterson, P;  Clark, K;  Martin, F;  Howe, K;  Flicek, P;  Walenz, BP;  Kwak, W;  Clawson, H;  Diekhans, M;  Nassar, L;  Paten, B;  Kraus, RHS;  Crawford, AJ;  Gilbert, MTP;  Zhang, G;  Venkatesh, B;  Murphy, RW;  Koepfli, KP;  Shapiro, B;  Johnson, WE;  Di Palma, F;  Marques-Bonet, T;  Teeling, EC;  Warnow, T;  Graves, JM;  Ryder, OA;  Haussler, D;  O'Brien, SJ;  Korlach, J;  Lewin, HA;  Howe, K;  Myers, EW;  Durbin, R;  Phillippy, AM;  Jarvis, ED
Adobe PDF(23042Kb)  |  收藏  |  浏览/下载：38/0  |  提交时间：2023/04/12
Platypus and echidna genomes reveal mammalian biology and evolution 期刊论文
NATURE, 2021, 卷号: 592, 期号: 7856, 页码: 756-+
作者:  Zhou, Y;  Shearwin-Whyatt, L;  Li, J;  Song, ZZ;  Hayakawa, T;  Stevens, D;  Fenelon, JC;  Peel, E;  Cheng, YY;  Pajpach, F;  Bradley, N;  Suzuki, H;  Nikaido, M;  Damas, J;  Daish, T;  Perry, T;  Zhu, ZX;  Geng, YC;  Rhie, A;  Sims, Y;  Wood, J;  Haase, B;  Mountcastle, J;  Fedrigo, O;  Li, QY;  Yang, HM;  Wang, J;  Johnston, SD;  Phillippy, AM;  Howe, K;  Jarvis, ED;  Ryder, OA;  Kaessmann, H;  Donnelly, P;  Korlach, J;  Lewin, HA;  Graves, J;  Belov, K;  Renfree, MB;  Grutzner, F;  Zhou, Q;  Zhang, GJ
Adobe PDF(12344Kb)  |  收藏  |  浏览/下载：32/0  |  提交时间：2023/04/12
Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum) 期刊论文
MOLECULAR ECOLOGY, 2021, 卷号: 30, 期号: 23, 页码: 6355-6369
作者:  Sanchez-Barreiro, F;  Gopalakrishnan, S;  Ramos-Madrigal, J;  Westbury, MV;  de Manuel, M;  Margaryan, A;  Ciucani, MM;  Vieira, FG;  Patramanis, Y;  Kalthoff, DC;  Timmons, Z;  Sicheritz-Ponten, T;  Dalen, L;  Ryder, OA;  Zhang, GJ;  Marques-Bonet, T;  Moodley, Y;  Gilbert, MTP
Adobe PDF(1462Kb)  |  收藏  |  浏览/下载：11/0  |  提交时间：2023/04/12
Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 576-589
作者:  Farre, M;  Kim, J;  Proskuryakova, AA;  Zhang, Y;  Kulemzina, AI;  Li, QY;  Zhou, Y;  Xiong, YQ;  Johnson, JL;  Perelman, PL;  Johnson, WE;  Warren, WC;  Kukekova, AV;  Zhang, GJ;  O'Brien, SJ;  Ryder, OA;  Graphodatsky, AS;  Ma, J;  Lewin, HA;  Larkin, DM
Adobe PDF(988Kb)  |  收藏  |  浏览/下载：1181/0  |  提交时间：2019/11/07
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits 期刊论文
SCIENCE, 2019, 卷号: 364, 期号: 6446, 页码: 1152-+
作者:  Chen, L;  Qin, Q;  Jiang, Y;  Wang, K;  Lin, ZS;  Li, ZP;  Bibi, F;  Yang, YZ;  Wang, JH;  Nie, WH;  Su, WT;  Liu, GC;  Li, QY;  Fu, WW;  Pan, XY;  Liu, C;  Yang, J;  Zhang, CZ;  Yin, Y;  Wang, Y;  Zhao, Y;  Zhang, C;  Wang, ZK;  Qin, YL;  Liu, W;  Wang, B;  Ren, YD;  Zhang, R;  Zeng, Y;  da Fonseca, RR;  Wei, B;  Li, R;  Wan, WT;  Zhao, RP;  Zhu, WB;  Wang, YT;  Duan, SC;  Gao, Y;  Zhang, YE;  Chen, CY;  Hvilsom, C;  Epps, CW;  Chemnick, LG;  Doug, Y;  Mirarab, S;  Siegismund, HR;  Ryder, OA;  Gilbert, MTP;  Lewin, HS;  Zhang, GJ;  Heller, R;  Wang, W
Adobe PDF(3392Kb)  |  收藏  |  浏览/下载：2089/0  |  提交时间：2023/04/12
Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 576-589
作者:  Farre, M;  Kim, J;  Proskuryakova, AA;  Zhang, Y;  Kulemzina, AI;  Li, QY;  Zhou, Y;  Xiong, YQ;  Johnson, JL;  Perelman, PL;  Johnson, WE;  Warren, WC;  Kukekova, AV;  Zhang, GJ;  O'Brien, SJ;  Ryder, OA;  Graphodatsky, AS;  Ma, J;  Lewin, HA;  Larkin, DM
Adobe PDF(2175Kb)  |  收藏  |  浏览/下载：95/0  |  提交时间：2023/04/12
An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi) 期刊论文
GIGASCIENCE, 2019, 卷号: 8, 期号: 8, 页码: -
作者:  Farre, M;  Li, QY;  Darolti, I;  Zhou, Y;  Damas, J;  Proskuryakova, AA;  Kulemzina, AI;  Chemnick, LG;  Kim, J;  Ryder, OA;  Ma, J;  Graphodatsky, AS;  Zhang, GJ;  Larkin, DM;  Lewin, HA
Adobe PDF(2796Kb)  |  收藏  |  浏览/下载：157/0  |  提交时间：2021/11/18
A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert 期刊论文
GIGASCIENCE, 2019, 卷号: 8, 期号: 2
作者:  Farre, M;  Li, QY;  Zhou, Y;  Damas, J;  Chemnick, LG;  Kim, J;  Ryder, OA;  Ma, J;  Zhang, GJ;  Larkin, DM;  Lewin, HA
Adobe PDF(2395Kb)  |  收藏  |  浏览/下载：42/0  |  提交时间：2019/11/04
Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation 期刊论文
NATURE GENETICS, 2016, 卷号: 48, 期号: 8, 页码: 947-952
作者:  Yu L*;  Wang GD;  Ruan J;  Chen YB;  Yang CP;  Cao X;  Wu H;  Irwin DM;  Ryder OA;  Li Y;  Wu CI*;  Zhang YP*
Adobe PDF(2527Kb)  |  收藏  |  浏览/下载：169/2  |  提交时间：2016/07/15