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Incomplete lineage sorting and phenotypic evolution in marsupials 期刊论文
CELL, 2022, 卷号: 185, 期号: 10, 页码: 1646-+
作者:  Feng, SH;  Bai, M;  Rivas-Gonzalez, I;  Li, C;  Liu, SP;  Tong, YJ;  Yang, HD;  Chen, GJ;  Xie, D;  Sears, KE;  Franco, LM;  Gaitan-Espitia, JD;  Nespolo, RF;  Johnson, WE;  Yang, HM;  Brandies, PA;  Hogg, CJ;  Belov, K;  Renfree, MB;  Helgen, KM;  Boomsma, JJ;  Schierup, MH;  Zhang, GJ
Adobe PDF(4447Kb)  |  收藏  |  浏览/下载：1418/0  |  提交时间：2023/04/12
Standards recommendations for the Earth BioGenome Project 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 卷号: 119, 期号: 4
作者:  Lawniczak, MKN;  Durbin, R;  Flicek, P;  Lindblad-Toh, K;  Wei, XF;  Archibald, JM;  Baker, WJ;  Belov, K;  Blaxter, ML;  Bonet, TM;  Childers, AK;  Coddington, JA;  Crandall, KA;  Crawford, AJ;  Davey, RP;  Di Palma, F;  Fang, Q;  Haerty, W;  Hall, N;  Hoff, KJ;  Howe, K;  Jarvis, ED;  Johnson, WE;  Johnson, RN;  Kersey, PJ;  Liu, X;  Lopez, JV;  Myers, EW;  Pettersson, OV;  Phillippy, AM;  Poelchau, MF;  Pruitt, KD;  Rhie, A;  Castilla-Rubio, JC;  Sahu, SK;  Salmon, NA;  Soltis, PS;  Swarbreck, D;  Thibaud-Nissen, F;  Wang, SB;  Wegrzyn, JL;  Zhang, GJ;  Zhang, H;  Lewin, HA;  Richards, S
Adobe PDF(1336Kb)  |  收藏  |  浏览/下载：262/0  |  提交时间：2023/04/12
The Earth BioGenome Project 2020: Starting the clock 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 卷号: 119, 期号: 4
作者:  Lewin, HA;  Richards, S;  Aiden, EL;  Allende, ML;  Archibald, JM;  Balint, M;  Barker, KB;  Baumgartner, B;  Belov, K;  Bertorelle, G;  Blaxter, ML;  Cai, J;  Caperello, ND;  Carlson, K;  Castilla-Rubio, JC;  Chaw, SM;  Chen, L;  Childers, AK;  Coddington, JA;  Conde, DA;  Corominas, M;  Crandall, KA;  Crawford, AJ;  DiPalma, F;  Durbin, R;  Ebenezer, TE;  Edwards, SV;  Fedrigo, O;  Flicek, P;  Formenti, G;  Gibbs, RA;  Gilbert, MTP;  Goldstein, MM;  Graves, JM;  Greely, HT;  Grigoriev, IV;  Hackett, KJ;  Hall, N;  Haussler, D;  Helgen, KM;  Hogg, CJ;  Isobe, S;  Jakobsen, KS;  Janke, A;  Jarvis, ED;  Johnson, WE;  Jones, SJM;  Karlsson, EK;  Kersey, PJ;  Kim, JH;  Kress, WJ;  Kuraku, S;  Lawniczak, MKN;  Leebens-Mack, JH;  Li, XY;  Lindblad-Toh, K;  Liu, X;  Lopez, JV;  Marques-Bonet, T;  Mazard, S;  Mazet, JAK;  Mazzoni, CJ;  Myers, EW;  O'Neill, RJ;  Paez, S;  Park, H;  Robinson, GE;  Roquet, C;  Ryder, OA;  Sabir, JSM;  Shaffer, HB;  Shank, TM;  Sherkow, JS;  Soltis, PS;  Tang, BP;  Tedersoo, L;  Uliano-Silva, M;  Wang, K;  Wei, XF;  Wetzer, R;  Wilson, JL;  Xu, X;  Yang, HM;  Yoder, AD;  Zhang, GJ
Adobe PDF(1428Kb)  |  收藏  |  浏览/下载：1146/0  |  提交时间：2023/04/12
Towards complete and error-free genome assemblies of all vertebrate species 期刊论文
NATURE, 2021, 卷号: 592, 期号: 7856, 页码: 737-+
作者:  Rhie, A;  McCarthy, SA;  Fedrigo, O;  Damas, J;  Formenti, G;  Koren, S;  Uliano-Silva, M;  Chow, W;  Fungtammasan, A;  Kim, J;  Lee, C;  Ko, BJ;  Chaisson, M;  Gedman, GL;  Cantin, LJ;  Thibaud-Nissen, F;  Haggerty, L;  Bista, I;  Smith, M;  Haase, B;  Mountcastle, J;  Winkler, S;  Paez, S;  Howard, J;  Vernes, SC;  Lama, TM;  Grutzner, F;  Warren, WC;  Balakrishnan, CN;  Burt, D;  George, JM;  Biegler, MT;  Iorns, D;  Digby, A;  Eason, D;  Robertson, B;  Edwards, T;  Wilkinson, M;  Turner, G;  Meyer, A;  Kautt, AF;  Franchini, P;  Detrich, HW;  Svardal, H;  Wagner, M;  Naylor, GJP;  Pippel, M;  Malinsky, M;  Mooney, M;  Simbirsky, M;  Hannigan, BT;  Pesout, T;  Houck, M;  Misuraca, A;  Kingan, SB;  Hall, R;  Kronenberg, Z;  Sovi, I;  Dunn, C;  Ning, Z;  Hastie, A;  Lee, J;  Selvaraj, S;  Green, RE;  Putnam, NH;  Gut, I;  Ghurye, J;  Garrison, E;  Sims, Y;  Collins, J;  Pelan, S;  Torrance, J;  Tracey, A;  Wood, J;  Dagnew, RE;  Guan, D;  London, SE;  Clayton, DF;  Mello, CV;  Friedrich, SR;  Lovell, PV;  Osipova, E;  Al-Ajli, FO;  Secomandi, S;  Kim, H;  Theofanopoulou, C;  Hiller, M;  Zhou, Y;  Harris, RS;  Makova, KD;  Medvedev, P;  Hoffman, J;  Masterson, P;  Clark, K;  Martin, F;  Howe, K;  Flicek, P;  Walenz, BP;  Kwak, W;  Clawson, H;  Diekhans, M;  Nassar, L;  Paten, B;  Kraus, RHS;  Crawford, AJ;  Gilbert, MTP;  Zhang, G;  Venkatesh, B;  Murphy, RW;  Koepfli, KP;  Shapiro, B;  Johnson, WE;  Di Palma, F;  Marques-Bonet, T;  Teeling, EC;  Warnow, T;  Graves, JM;  Ryder, OA;  Haussler, D;  O'Brien, SJ;  Korlach, J;  Lewin, HA;  Howe, K;  Myers, EW;  Durbin, R;  Phillippy, AM;  Jarvis, ED
Adobe PDF(23042Kb)  |  收藏  |  浏览/下载：174/0  |  提交时间：2023/04/12
Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 576-589
作者:  Farre, M;  Kim, J;  Proskuryakova, AA;  Zhang, Y;  Kulemzina, AI;  Li, QY;  Zhou, Y;  Xiong, YQ;  Johnson, JL;  Perelman, PL;  Johnson, WE;  Warren, WC;  Kukekova, AV;  Zhang, GJ;  O'Brien, SJ;  Ryder, OA;  Graphodatsky, AS;  Ma, J;  Lewin, HA;  Larkin, DM
Adobe PDF(988Kb)  |  收藏  |  浏览/下载：1351/0  |  提交时间：2019/11/07
Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 576-589
作者:  Farre, M;  Kim, J;  Proskuryakova, AA;  Zhang, Y;  Kulemzina, AI;  Li, QY;  Zhou, Y;  Xiong, YQ;  Johnson, JL;  Perelman, PL;  Johnson, WE;  Warren, WC;  Kukekova, AV;  Zhang, GJ;  O'Brien, SJ;  Ryder, OA;  Graphodatsky, AS;  Ma, J;  Lewin, HA;  Larkin, DM
Adobe PDF(2175Kb)  |  收藏  |  浏览/下载：133/0  |  提交时间：2023/04/12
The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host-Pathogen Arms Race in Birds 期刊论文
DIVERSITY-BASEL, 2019, 卷号: 11, 期号: 8, 页码: -
作者:  Khan, I;  Maldonado, E;  Silva, L;  Almeida, D;  Johnson, WE;  O'Brien, SJ;  Zhang, GJ;  Jarvis, ED;  Gilbert, MTP;  Antunes, A
Adobe PDF(2515Kb)  |  收藏  |  浏览/下载：141/0  |  提交时间：2021/11/18
Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2019, 卷号: 11, 期号: 8, 页码: 2244-2255
作者:  Borges, R;  Fonseca, J;  Gomes, C;  Johnson, WE;  O'Brien, SJ;  Zhang, GJ;  Gilbert, MTP;  Jarvis, ED;  Antunes, A
Adobe PDF(1088Kb)  |  收藏  |  浏览/下载：146/0  |  提交时间：2021/11/18
Tissue sampling methods and standards for vertebrate genomics 期刊论文
GIGASCIENCE, 2012, 卷号: 1, 期号: X, 页码: e8
作者:  Wong PBY;  Wiley EO;  Johnson WE;  Ryder OA;  O'Brien SJ;  Haussler D;  Koepfli KP;  Houck ML;  Perelman P;  Mastromonaco G;  Bentley AC;  Venkatesh B;  Zhang YP;  Murphy RW*
Adobe PDF(308Kb)  |  收藏  |  浏览/下载：352/3  |  提交时间：2013/09/16
Genome 10k  Sequencing  Vertebrates  Genomics  Tissue Sampling  Tissue Storage  Cell Line  Tissue  Culture  Rna  Dna  
Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species 期刊论文
JOURNAL OF HEREDITY, 2009, 卷号: 100, 期号: 6, 页码: 659-674
作者:  Haussler D;  O'Brien SJ;  Ryder OA;  Barker FK;  Clamp M;  Crawford AJ;  Hanner R;  Hanotte O;  Johnson WE;  McGuire JA;  Miller W;  Murphy RW;  Zhang YP
Adobe PDF(1415Kb)  |  收藏  |  浏览/下载：176/5  |  提交时间：2010/08/24
Ancestral State Reconstruction  Comparative Genomics  G10k  Molecular Evolution  Species Conservation  Vertebrate Biology